The Proceedings of the Eighth International Conference on Creationism (2018)

superfamily. Nature 374:57–59. Johnson, M.J., D.C. Wallace, D.C. Ferris, M.C. Rattazzi, and L.L. Cavalli- Sforza. 1983. Radiation of human mitochondria DNA types analyzed by restriction endonuclease cleavage patterns. Journal of Molecular Evolution 19, no. 3:255–271. Karmin, M., L. Saag, M. Vicente, M.A.W Sayres, M. Järve, U.G. Talas. 2015. A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Genome Research 25:459–466. Keenan, A., and A.G. Clark. 2012. Recent explosive human population growth has resulted in an excess of rare genetic variants. Science 336:740-743. Kong, A., M.L. Frigge, G. Masson, S. Besenbacher, P. Sulem, G. Magnusson, S.A. Gudjonsson, A. Sigurdsson, A. Jonasdottir, A. Jonasdottir, W. Wong, G. Sigurdsson, G.B. Walters, S. Steinberg, H. Helgason, G. Thorleifsson, D.F. Gudbjartsson, A. Helgason, O.Th. Magnusson, U. Thorsteinsdottir, and K. Stefansson. 2012. Rate of de novo mutations, father’s age, and disease risk. Nature 488, no. 7412:471–475. Karafet, T.M., L. Mendez, M.B. Meilerman, P.A. Underhill, S.L. Zegura, and M.F. Hammer. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Research 18:8930–838. Krašovec, R., H. Richards, D.R. Gifford, C. Hatcher, K.J. Faulkner, R.V. Belavkin, A. Channon, E. Aston, A.J. McBain, and C.G. Knight. 2017. Spontaneous mutation rate is a plastic trait associated with population density across domains of life. PLOS Biology 15(8):e2002731. Langergraber, K.E., 2009. Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution. Proceedings of the National Academy of Science 109, no. 39:15716–15721. Lesecque, Y., D. Mouchiroud, and L. Duret. 2013. GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance. Molecular Biology and Evolution 30, no. 6:1409–1419. Loogväli, E.L., T. Kivisild, T. Margus, and R. Villems. 2009. Explaining the imperfection of the molecular clock of hominid mitochondria. PLoS One 4, no. 12: e8260. Lopez, P., D. Casane, and H. Philippe. 2002. Heterotachy, an important process of protein evolution. Molecular Biology and Evolution 19, no. 1:1–7. Madrigal, L., L. Castrì, M. Melendez-Obando, R.Villegas-Palma, R. Barrantes, H. Raventos, R. Pereira, D. Luiselli, D. Pettener, and G. Barbujani. 2012. High mitochondrial mutation rates estimated from deep-rooting Costa Rican pedigrees. American Journal of Physical Anthropology 148:327–333. Mallik, S., H. Li, M. Lipson, I. Mathieson, M. Gymrek, F. Racimo, 2016. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature 538:201-206. Mendez, F.L., T. Krahn, B. Schrack, A-.M. Krahn, K.R. Veeramah, A.E. Woerner, F.L.M. Fomine, N. Bradman, M.G. Thomas, T.M. Karafet, and M.F. Hammer. 2013. An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree. The American Journal of Human Genetics 92:454–459. Moorjani, P., C.E.G Amorim, P.F. Arndt, and M. Przeworski. 2016. Variation in the molecular clock of primates. Proceedings of the National Academy of Science 113, no. 38:10607–10612. Pauling L., and E. Zuckerkandl. 1963. Chemical paleogenetics, molecular “restoration studies” of extinct forms of life. Acta Chemica Scandinavica 17, no 89: 9–16. Pinto, C., M. Pinheiro, A. Peixoto, C. Santos, I. Veiga, P. Rocha, P. Pinto, P. Lopes, M. Baptista, R. Henrique, and M.R. Teixeira. 2016. Co-occurrence of nonsense mutations in MSH6 and MSH2 in Lynch syndrome families evidencing that not all truncating mutations are equal. Journal of Human Genetics 61, no. 2:151–6. Poznik, G.D., B.M. Henn, M.-C.Yee, E. Sliwerska, G.M. Euskirchen, A.A. Lin, M. Snyder, L. Quintana-Murci, J.M. Kidd, P.A. Underhill, and C.D. Bustamante. 2013. Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females. Science 341:562– 565. Poznik, G.D., Y. Xue, F.L. Mendez, T.F. Willems, A. Massaia, M.A. Wilson Sayres, Q. Ayub, S.A. McCarthy, A. Narechania, S. Kashin, Y. Chen, R. Banerjee, J.L. Rodriguez-Flores, M. Cerezo, H. Shao, M. Gymrek, A. Malhotra, S. Louzada, R. Desalle, G.R.S. Ritchie, E. Cerveira, T.W. Fitzgerald, E. Garrison, A. Marcketta, D. Mittelman, M. Romanovitch, C. Zhang, X. Zheng-Bradley, G.R. Abecasis, S.A. McCarroll, P. Flicek, P.A. Underhill, L. Coin, D.R. Zerbino, F. Yang, C. Lee, L. Clarke, A. Auton, Y. Erlich, R.E. Handsaker, The 1000 Genomes Project Consortium, C.D. Bustamante, and C. Tyler-Smith. 2016. Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nature Genetics 48:593–599. Pupko, T., I.P.R. Shamir, and G. Graur. 2000. A fast algorithm for joint reconstruction of ancestral amino acid sequences. Molecular Biology and Evolution 17, no. 6:890–896. Purps, J., S. Siegert, S. Willuweit, M. Nagy, C. Alves, R. Salazar, et al. 2014. A global analysis of Y-chromosomal haplotype diversity for 23 STR loci. FSI:Genetics 12:12–23. Rahbari, R., A. Wuster, S.J. Lindsay, R.J. Hardwick, L.B. Alexandrov, S.A. Turki, A. Dominiczak, A. Morris, D. Porteous, B. Smith, M.R. Stratton, UK10K Consortium, and M.E. Hurles. 2015. Timing, rates and spectra of human germline mutation. Nature Genetics 48, no. 2:126–133. Reich, D., R.E. Green, M. Kircher, J. Krause, N. Patterson, E.Y. Durand B. Viola, A.W. Briggs, U. Stenzel, P.L.F. Johnson, T. Maricic, J.M. Good, T. Marques-Bonet, C. Alkan, Q. Fu, S. Mallick, H. Li, M. Meyer, E.E. Eichler, M. Stoneking, M. Richards, S. Talamo, M.V. Shunkov, A.P. Derevianko, J.-J. Hublin, J. Kelso, M. Slatkin, and S. Pääbo. 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468:1053–1060. Romualdi, C., D. Balding, I.S. Nasidze, G. Risch, M. Robichaux, S.T. Sherry, M. Stoneking, M.A. Batzer, and G. Barbujani. 2002. Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Research 12:602–612. Rozen, S., H. Skaletsky, J.D. Marszalek, P.J. Minx, H.S. Cordum, R.H. Waterston, R.K.Wilson, andD.C. Page. 2003.Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. Nature 423:873–876. Rupe, C.L., and J.C. Sanford. 2013. Using numerical simulation to better understand fixation rates, and establishment of a new principle: Haldane’s Ratchet) Proceedings of the Seventh International Conference on Creationism . In ed. M.Horstemeyer, Pittsburgh, Pennsylvania: Creation Science Fellowship. Sayres, M.A.W., K.E. Lohmueller, and R. Nielsen. 2014. Natural selection reduced diversity on human Y chromosomes. PLoS Genetics 10, no. 1:e1004064. Schuenemann, V.J., A. Peltzer, B. Welte, W.P. van Pelt, M. Molak, C.-C. Wang, A. Furtwängler, C. Urban, E. Reiter, K. Nieselt, B. TeɃmann, Carter et al. ◀ Y Chromosome Noah and mitochondrial Eve ▶ 2018 ICC 150