The Proceedings of the Ninth International Conference on Creationism (2023)

2022. Mutation bias reflects natural selection in Arabidopsis thaliana. Nature, 602:101–105. Doi.org/10.1038/s41586-021-04269-6. Moran, R.L., J.B. Jaggard, E.Y. Roback, A. Kenzior, N. Rohner, J.E. Kowalko, C.P. Ornelas-García, S.E. McGaugh, and A.C. Keene. 2022. Hybridization underlies localized trait evolution in cavefish. Iscience 25, no. 2. Doi.org/10.1016/j.isci.2022.103778. Muller, G.B. 2017 Why an extended evolutionary synthesis is necessary. The Royal Society, Interface Focus 7: 20170015. Doi.org/10.1098/ rsfs.2017.0015. O’Gorman, M., S. Thakur, G. Imrie, R.L. Moran, S. Choy, I. Sifuentes-Romero, H. Bilandžija, K.J. Renner, E. Doboué, N. Rohner, S. McGaugh, A.C. Keene, and J.E. Kowalko. 2021. Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish. Current Biology 31. No. 16:3694–3701. e4. Doi.org/10.1016/j.cub.2021.06.077. Ornelas-Garcia, C.P., O. Dominguez-Dominguez, and I. Doadrio. 2008. Evolutionary history of the fish genus Astyanax baird & girard (1854) (Actinopterygii, Characidae) in Mesoamerica reveals multiple morphological homoplasies. BMC Evolutionary Biology 8, no. 1: 340. Doi. org/10.1186/1471-2148-8-340. Pinto, Y., O. Gabay, L. Arbiza, A.J. Sams, A. Keinan, and E.Y. Levanon. 2016. Clustered Mutations in Hominid Genome Evolution are Consistent with APOBEC3G Enzymatic Activity. Genome Research 26, no. 5: 579– 587. Doi.org/10.1101/gr.199240.115. Pittoggi, C., R. Beraldi, I. Sciamanna, L. Barberi, R. Giordano, A.R. Magnano, L. Torosantucci, E. Pescarmona, and C. Spadafora. 2006. Generation of biologically active retro-genes upon interaction of mouse spermatozoa with exogenous DNA. Molecular Reproduction and Development 73, no. 10: 1239–1246. Doi.org/10.1002/mrd.20550. Polak, P., and E. Domany. 2006. Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. BMC Genomics 7:133. Doi.org/10.1186/1471-2164-7-133. Pottin, K., H. Hinaux, and S. Rétaux. 2011. Restoring eye size in Astyanax mexicanus blind cavefish embryos through modulation of the Shh and Fgf8 forebrain organising centres. Development 138, no. 12:2467–2476. Doi. org/10.1242/dev.054106. Protas, M.E, C. Hersey, D. Kochanek, Y. Zhou, H. Wilkens, W.R. Jeffery, L.I. Zon, R. Borowsky, and C.J. Tabin. 2006. Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism. Nature genetics 38, no. 1:107–111. Doi.org/10.1038/ng1700. Radman, M. 1975. SOS Repair Hypothesis: Phenomenology of an Inducible DNA Repair Which Is Accompanied by Mutagenesis. In Molecular Mechanisms for Repair of DNA. Hanawalt, P, editor. New York: Plenum Press. Riddle, M., B. Martineau, M. Peavey, and C. Tabin. 2018. Raising the Mexican Tetra Astyanax mexicanus for analysis of post-larval phenotypes and whole-mount immunohistochemistry. JoVE (Journal of Visualized Experiments) 142:e58972. Doi.org/10.3791/58972. Shapiro, J.A., and D. Noble. 2021. What prevents mainstream evolutionists teaching the whole truth about how genomes evolve? Progress in Biophysics and Molecular Biology 165: 140–152. Doi.org/10.1016/j.pbiomolbio.2021.04.004. Shapiro, J.A. 2022. Evolution: A View from the 21st Century. Fortified. Chicago, IL: Cognition Press. Sharma, A. 2013. Transgenerational epigenetic inheritance: Focus on soma to germline information transfer. Progress in Biophysics and Molecular Biology 113, no. 3: 439-446. Sifuentes‒Romero, I., E. Ferrufino, S. Thakur, L.A. Laboissonniere, M. Solomon, C.L. Smith, A.C. Keene, J.M. Trimarchi, and J.E. Kowalko. 2020. Repeated evolution of eye loss in Mexican cavefish: Evidence of similar developmental mechanisms in independently evolved populations. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 334, no. 7-8:423–437. Doi.org/10.1002/jez.b.22977. Stocker, C.W., J. Haddy, J. Lyle, and B.F. Nowak. 2020. Muscle melanisation of southern sand flathead (Platycephalus bassensis) in the Tamar Estuary, Tasmania, Australia. Environmental Pollution 256:113452. Doi. org/10.1016/j.envpol.2019.113452. Strecker, U., V.H. Faundezand, and H. Wilkens. 2004. Phylogeography of surface and cave Astyanax (Teleostei) from Central and North America based on cytochrome b sequence data. Molecular Phylogenetics and Evolution 33, no. 2: 469–481. Doi.org/10.1016/j.ympev.2004.07.001. Sultan, S.E. 2021. Phenotypic plasticity as an intrinsic property of organisms. In: Pfennig D.W. (ed) Phenotypic Plasticity & Evolution: Causes, Consequences, Controversies, 1st ed. CRC Press, pp. 3-24. Tang, J.L.Y., Y. Guo, W.T. Stockdale, K. Rana, A.C. Killen, M.T.M. Mommersteeg, and Y. Yamamoto. 2018. The developmental origin of heart size and shape differences in Astyanax mexicanus populations. Developmental biology 441, no. 2:272–284. Doi.org/10.1016/j.ydbio.2018.06.009. Tomkins, J.P., S. Arledge, and R.J. Guliuzza. 2022. Catching the Vision: Blind Cave Fish (Astyanax mexicanus) as a Model System for Continuous Environmental Tracking and Adaptive Engineering. Creation Research Society Quarterly 58, no. 4: 289–298. Urry, L.A., M.L. Cain, S.A. Wasserman, P.V. Minorsky, R.B. Orr, and N.A. Campbell (editors). 2020. Campbell biology. Twelfth edition. ed. New York, NY: Pearson. van der Weele, C.M., and W.R. Jeffery. 2022. Cavefish cope with environmental hypoxia by developing more erythrocytes and overexpression of hypoxia-inducible genes. Elife 11:e69109. Doi.org/10.7554/eLife.69109. Varatharasan, N., R.P. Croll, and T. Franz‒Odendaal. 2009. Taste bud development and patterning in sighted and blind morphs of Astyanax mexicanus. Developmental Dynamics 238, no. 12:3056–3064. Doi.org/10.1002/ dvdy.22144. Warren, W. C., T.E. Boggs, R. Borowsky, B.M. Carlson, E. Ferrufino, J.B. Gross, L. Hillier, Z. Hu, A.C. Keene, A. Kenzior, J.E. Kowalko, C. Tomlinson, M. Kremitzki, M.E. Lemieux, T. Graves-Lindsay, S.E. McGaugh, J.T. Miller, M.T.M. Mommersteeg, R.L. Moran, R. Peuß, E.S. Rice, M.R. Riddle, I. Sifuentes-Romero, B.A. Stanhope, C.J. Tabin, S. Thakur, Y. Yamamoto, and N. Rohner 2021. A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution. Nat Commun 12 (1):1447. Doi.org/10.1038/ s41467-021-21733-z. Veitia, R.A. 2022. Who ever thought genetic mutations were random? Trends in Plant Science 27, no. 8: 733-735. Doi.org/10.1016/j.tplants.2022.03.003. West-Eberhard, M.J. 2019. Modularity as a universal emergent property of biological traits. Journal of Experimental Zoology B Molecular and Developmental Evolution, 332:356–364. Doi.org/10.1002/jez.b.22913. White, W.B., D.C. Culver, and T. Pipan (editors). 2019. Encyclopedia of caves. Third edition. ed. London: Academic Press. Wieland, C. 1997. Flightless insects on windswept islands: Even a defect can be an advantage sometimes. Creation 19, no. 3:30. Wieland, C. 1997. Superbugs not super after all. Creation 20, no. 1:10–13. Weismann, A. 1889. Essays upon Heredity and Kindred Biological Problems. Oxford University Press. Witkin, E., and D. George. 1973. Ultraviolet mutagenesis in polA and UvrA polA derivatives of Escherichia coli B/R: Evidence for an inducible error-prone repair system. Genetics, 73:91–108. Wright, B.E. 2000. A Biochemical Mechanism for Nonrandom Mutations and Evolution. Journal of Bacteriology, 182, no. 11: 2993-3001. Doi. org/10.1128/JB.182.11.2993-3001.2000. Yamamoto, Y., M.S. Byerly, W.R. Jackman, and W.R. Jeffery. 2009. Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution. Developmental biology 330, no. 1:200–211. Doi.org/10.1016/j.ydbio.2009.03.003. Yamamoto, Y., D.W. Stock, and W.R. Jeffery. 2004. Hedgehog signalling controls eye degeneration in blind cavefish. Nature 431, no. 7010:844–847. BOYLE, ARLEDGE, THOMAS, TOMKINS, AND GULIUZZA Testing the cavefish model 2023 ICC 142

RkJQdWJsaXNoZXIy MTM4ODY=